DNase-seq_ENCSR260UJJ
DNase-seq ENCSR260UJJ [biosample_summary="Homo sapiens T-helper 1 cell male adult (42 years)"]
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| Id: | DNase-seq/ENCSR260UJJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR260UJJ [biosample_summary="Homo sapiens T-helper 1 cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF060ORA|/files/ENCFF060ORA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR260UJJ | float |
DNase-seq_ENCSR260UJJ |
DNase-seq ENCSR260UJJ [biosample_summary="Homo sapiens T-helper 1 cell male adult (42 years)"]
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[0.185, 28] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF503PRJ.bed.gz | 289.43 KB | 696236ca48e314257efea089da1e2321 |
| ENCFF503PRJ.bed.gz.dvc | 100.0 B | 8d0c716daedfa898df93b0dee18861ab |
| ENCFF503PRJ.tabix.bed.gz | 262.2 KB | 42cd73ec9a7a6936a1595101335de3c3 |
| ENCFF503PRJ.tabix.bed.gz.dvc | 106.0 B | 8f9eaeea81e987cc8e14b8a711cf66e4 |
| ENCFF503PRJ.tabix.bed.gz.tbi | 151.56 KB | 8f0d86964193aef1f30a5cd24cd9bfb1 |
| ENCFF503PRJ.tabix.bed.gz.tbi.dvc | 110.0 B | 8fa9a43fdd090344c2b25c41343d117a |
| genomic_resource.yaml | 2.02 KB | ffbf5eb4ddec5af7104574f5c452f9c2 |
| genomic_resource_original.yaml | 1.93 KB | 9787145765e6678007612638b5893dce |
| statistics/ |