Resource

Id DNase-seq/ENCSR260UJJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR260UJJ [biosample_summary="Homo sapiens T-helper 1 cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR260UJJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell male adult (42 years)
  • date_created: 2020-04-16T03:32:07.945593+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR260UJJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR260UJJ float

DNase-seq_ENCSR260UJJ
DNase-seq ENCSR260UJJ [biosample_summary="Homo sapiens T-helper 1 cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR260UJJ [0.185, 28]
n
4,963,331
mean
4.18
sd
3.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 49633310.15% 25920
chr1 511702 0.21% 2688
chr2 333683 0.14% 1748
chr3 254377 0.13% 1323
chr4 159118 0.08% 823
chr5 224376 0.12% 1169
chr6 258974 0.15% 1362
chr7 218978 0.14% 1132
chr8 168306 0.12% 917
chr9 200197 0.14% 1032
chr10 211387 0.16% 1102
chr11 268276 0.20% 1393
chr12 251733 0.19% 1298
chr13 95291 0.08% 490
chr14 174324 0.16% 915
chr15 163658 0.16% 854
chr16 215526 0.24% 1121
chr17 325514 0.39% 1715
chr18 64465 0.08% 339
chr19 399650 0.68% 2032
chr20 136144 0.21% 735
chr21 53581 0.11% 291
chr22 127238 0.25% 675
chrX 140907 0.09% 738
chrY 5926 0.01% 28
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25920 5 680 191.49 198
global segment-length histogram

Files

Filename Size md5
ENCFF503PRJ.bed.gz 289.43 KB 696236ca48e314257efea089da1e2321
ENCFF503PRJ.tabix.bed.gz 262.2 KB 42cd73ec9a7a6936a1595101335de3c3
ENCFF503PRJ.tabix.bed.gz.tbi 151.56 KB 8f0d86964193aef1f30a5cd24cd9bfb1
genomic_resource.yaml 2.02 KB ffbf5eb4ddec5af7104574f5c452f9c2
statistics/