DNase-seq_ENCSR258POP
DNase-seq ENCSR258POP [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR258POP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR258POP [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF100WCS|/files/ENCFF100WCS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR258POP | float |
DNase-seq_ENCSR258POP |
DNase-seq ENCSR258POP [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0636, 19.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF592VFA.bed.gz | 905.31 KB | 1792764c74486fbd2c26398cff634ed5 |
| ENCFF592VFA.bed.gz.dvc | 100.0 B | 5e9726b46c1d00f224188a5928a7d422 |
| ENCFF592VFA.tabix.bed.gz | 825.55 KB | a1fc97eee994e619186989e6e32932e6 |
| ENCFF592VFA.tabix.bed.gz.dvc | 106.0 B | 5ecf80ebad1d6cf6cb91b760386214c5 |
| ENCFF592VFA.tabix.bed.gz.tbi | 313.69 KB | a7f482204a12caa22d13c39c6f99249d |
| ENCFF592VFA.tabix.bed.gz.tbi.dvc | 110.0 B | 10911ef4134a5de82d7efa2e378e15e5 |
| genomic_resource.yaml | 2.29 KB | 743a1e24b1a63bbc805dd23308f1b019 |
| genomic_resource_original.yaml | 2.14 KB | e6cfb646bc88bf8a7c38cf52b5acfbae |
| statistics/ |