| Id: | DNase-seq/ENCSR255OGF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR255OGF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF445MCI|/files/ENCFF445MCI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR255OGF | float |
DNase-seq_ENCSR255OGF |
DNase-seq ENCSR255OGF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
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[0.197, 30.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF169XPT.bed.gz | 377.17 KB | 7a800dde66254325bf4ca20ae85310ea |
| ENCFF169XPT.bed.gz.dvc | 100.0 B | 14ac410131471325a91dd687d7660f6f |
| ENCFF169XPT.tabix.bed.gz | 342.51 KB | 902b522c387befc084fa46e4eb74d879 |
| ENCFF169XPT.tabix.bed.gz.dvc | 106.0 B | 27a17bb4694f0780fd2c1deb7b9b686a |
| ENCFF169XPT.tabix.bed.gz.tbi | 187.22 KB | 007079a088b695a2b0132e5d7be4f63b |
| ENCFF169XPT.tabix.bed.gz.tbi.dvc | 110.0 B | e6dfdd3b29f25d56d03e99d4a1a53131 |
| genomic_resource.yaml | 2.62 KB | 298bc46b852ff20511a9c35320021ff1 |
| genomic_resource_original.yaml | 2.4 KB | 3545dc5d12325e914c12d009e4281af8 |
| statistics/ |