Resource

Id DNase-seq/ENCSR254BCAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR254BCA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR254BCA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-19T18:36:47.281020+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR254BCA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR254BCA float

DNase-seq_ENCSR254BCA
DNase-seq ENCSR254BCA [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR254BCA [0.35, 103]
n
7,044,383
mean
9.24
sd
11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 70443830.22% 39054
chr1 713524 0.29% 3958
chr2 495340 0.20% 2779
chr3 375256 0.19% 2086
chr4 239740 0.13% 1301
chr5 307818 0.17% 1705
chr6 402998 0.24% 2244
chr7 327092 0.21% 1821
chr8 251937 0.17% 1411
chr9 284340 0.21% 1579
chr10 301148 0.23% 1678
chr11 364148 0.27% 2046
chr12 350790 0.26% 1932
chr13 145540 0.13% 793
chr14 251405 0.23% 1388
chr15 221332 0.22% 1242
chr16 298334 0.33% 1631
chr17 446056 0.54% 2451
chr18 107952 0.13% 613
chr19 494450 0.84% 2663
chr20 197591 0.31% 1116
chr21 86446 0.19% 490
chr22 174436 0.34% 984
chrX 206710 0.13% 1143
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39054 15 720 180.38 180
global segment-length histogram

Files

Filename Size md5
ENCFF654XQL.bed.gz 431.38 KB 62f0e6b21bf1cf0c79f56d2c54f13e6f
ENCFF654XQL.tabix.bed.gz 390.57 KB a1c9d0628df4ec4748fbc77939464e5e
ENCFF654XQL.tabix.bed.gz.tbi 204.45 KB 7520d624699c6752bcd2384126c9d8a7
genomic_resource.yaml 1.88 KB 59f52565150b59cde8e27d0bd54ad98e
statistics/