Resource

Id DNase-seq/ENCSR254AGAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR254AGA [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (91 days)"]
Description
Labels
  • accession: ENCSR254AGA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue male embryo (91 days)
  • date_created: 2015-09-16T21:42:33.875299+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR254AGA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (91 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR254AGA float

DNase-seq_ENCSR254AGA
DNase-seq ENCSR254AGA [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (91 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR254AGA [3, 631]
n
8,977,161
mean
39.3
sd
38.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89771610.28% 59666
chr1 825623 0.33% 5494
chr2 688901 0.28% 4583
chr3 579121 0.29% 3844
chr4 481968 0.25% 3197
chr5 501603 0.28% 3337
chr6 540713 0.32% 3592
chr7 457800 0.29% 3044
chr8 405392 0.28% 2695
chr9 383681 0.28% 2544
chr10 437798 0.33% 2909
chr11 461280 0.34% 3069
chr12 449557 0.34% 2985
chr13 243573 0.21% 1616
chr14 289748 0.27% 1925
chr15 284929 0.28% 1895
chr16 288849 0.32% 1923
chr17 368400 0.44% 2452
chr18 208769 0.26% 1390
chr19 344400 0.59% 2285
chr20 241778 0.38% 1610
chr21 103479 0.22% 684
chr22 160749 0.32% 1070
chrX 221700 0.14% 1474
chrY 7350 0.01% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59666 4 450 150.46 150
global segment-length histogram

Files

Filename Size md5
ENCFF027SVR.bed.gz 581.6 KB 660fbfade13bac16442da41a3fdcf3d1
ENCFF027SVR.tabix.bed.gz 497.27 KB abc70e4501f233fea4f59bbcaac16abd
ENCFF027SVR.tabix.bed.gz.tbi 348.88 KB 803f5906bffd5dcfe31b89dfeff4e900
genomic_resource.yaml 1.44 KB 630a80889912b035cd82938b49c6faaf
statistics/