Resource

Id DNase-seq/ENCSR251INEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR251INE [biosample_summary="Homo sapiens T-cell female adult (24 years)"]
Description
Labels
  • accession: ENCSR251INE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (24 years)
  • date_created: 2020-03-30T19:01:28.036406+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR251INE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR251INE float

DNase-seq_ENCSR251INE

DNase-seq ENCSR251INE [biosample_summary="Homo sapiens T-cell female adult (24 years)"]
HISTOGRAM FOR DNase-seq_ENCSR251INE [0.0539, 96.5]
n
13,908,131
mean
4.51
sd
7.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139081310.43% 66743
chr1 1371882 0.55% 6491
chr2 1009799 0.42% 4899
chr3 742561 0.37% 3563
chr4 450651 0.24% 2148
chr5 620707 0.34% 2964
chr6 783138 0.46% 3692
chr7 652584 0.41% 3182
chr8 522530 0.36% 2518
chr9 555042 0.40% 2700
chr10 647572 0.48% 3121
chr11 739629 0.55% 3567
chr12 702775 0.53% 3325
chr13 285893 0.25% 1343
chr14 499403 0.47% 2433
chr15 477692 0.47% 2343
chr16 566869 0.63% 2695
chr17 856717 1.03% 4046
chr18 219861 0.27% 1082
chr19 837766 1.43% 3959
chr20 399675 0.62% 1946
chr21 187719 0.40% 916
chr22 359284 0.71% 1778
chrX 418052 0.27% 2029
chrY 330 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66743 2 940 208.38 200
global segment-length histogram

Files

Filename Size md5
ENCFF978APK.bed.gz 749.76 KB afb9ff99405bb9ac49a0750484504ae2
ENCFF978APK.tabix.bed.gz 687.79 KB b799919dac093bd9dc511c0228c66a59
ENCFF978APK.tabix.bed.gz.tbi 267.15 KB 2ac502e2d55c00d6d5e6ecf1128d849f
genomic_resource.yaml 1.19 KB 4748a4f57593da7da57351466d629e0b
statistics/