Resource

Id DNase-seq/ENCSR250GDWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR250GDW [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-4 for 1 hour"]
Description
Labels
  • accession: ENCSR250GDW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-4 for 1 hour
  • date_created: 2018-11-30T18:43:54.731349+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR250GDW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years) treated with Interleukin-4 for 1 hour
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR483PGP.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR250GDW float

DNase-seq_ENCSR250GDW
DNase-seq ENCSR250GDW [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-4 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR250GDW [0.0404, 144]
n
16,064,760
mean
4.94
sd
11.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 160647600.50% 85547
chr1 1522674 0.61% 8077
chr2 1258854 0.52% 6803
chr3 876598 0.44% 4713
chr4 545067 0.29% 2970
chr5 752909 0.41% 4022
chr6 885892 0.52% 4679
chr7 743481 0.47% 3995
chr8 672396 0.46% 3630
chr9 671599 0.49% 3582
chr10 756823 0.57% 4089
chr11 861963 0.64% 4623
chr12 786952 0.59% 4154
chr13 299651 0.26% 1600
chr14 544161 0.51% 2882
chr15 516586 0.51% 2795
chr16 624627 0.69% 3283
chr17 937526 1.13% 4926
chr18 278032 0.35% 1513
chr19 972077 1.66% 4883
chr20 478635 0.74% 2566
chr21 210733 0.45% 1142
chr22 434488 0.85% 2314
chrX 432435 0.28% 2301
chrY 601 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85547 2 840 187.79 180
global segment-length histogram

Files

Filename Size md5
ENCFF991QVV.bed.gz 965.66 KB 25da8fef45157ab4c8d1bf08651a403b
ENCFF991QVV.tabix.bed.gz 878.19 KB 8fcce75fb68125a5a34299acff0b8faf
ENCFF991QVV.tabix.bed.gz.tbi 309.42 KB 1bcaf3fcc900dacfff00f6b1fc33bee1
genomic_resource.yaml 1.58 KB 7b69d51c3859c5e4ae77c4da12184c5e
statistics/