DNase-seq_ENCSR249RFY
DNase-seq ENCSR249RFY [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR249RFY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR249RFY [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF949QMT|/files/ENCFF949QMT/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR249RFY | float |
DNase-seq_ENCSR249RFY |
DNase-seq ENCSR249RFY [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.107, 10.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF475AVI.bed.gz | 352.37 KB | bd419c21713b5da07b5f00f26b379676 |
| ENCFF475AVI.bed.gz.dvc | 100.0 B | f40da5dbb95211a490e35d426177f600 |
| ENCFF475AVI.tabix.bed.gz | 321.25 KB | 45b8ff7dd7aee02de9447e9c9a62057f |
| ENCFF475AVI.tabix.bed.gz.dvc | 106.0 B | 69c7bd3f646b2d5e979d740ca343d2d6 |
| ENCFF475AVI.tabix.bed.gz.tbi | 135.77 KB | f80218bbf031a1c042cff2d3d1ce3c19 |
| ENCFF475AVI.tabix.bed.gz.tbi.dvc | 110.0 B | 2a72e821c60c3cda6d1c996b6c5d069a |
| genomic_resource.yaml | 2.25 KB | f94e0a9150e529ba6353382f5dcafeba |
| genomic_resource_original.yaml | 2.1 KB | b534efd0fe6bffb9da9a6b71ab1f97e4 |
| statistics/ |