DNase-seq_ENCSR247IUJ
DNase-seq ENCSR247IUJ [biosample_summary="Homo sapiens B cell male adult (37 years)"]
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| Id: | DNase-seq/ENCSR247IUJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR247IUJ [biosample_summary="Homo sapiens B cell male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_warning: Alignment file {ENCFF118HJV|/files/ENCFF118HJV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25637560 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF118HJV|/files/ENCFF118HJV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR247IUJ | float |
DNase-seq_ENCSR247IUJ |
DNase-seq ENCSR247IUJ [biosample_summary="Homo sapiens B cell male adult (37 years)"]
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[0.274, 19.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF262LZH.bed.gz | 343.24 KB | beaadb0beb8bfb7c1234cd5f0d03213b |
| ENCFF262LZH.bed.gz.dvc | 100.0 B | ea704d586521cec1097c251d83afaba4 |
| ENCFF262LZH.tabix.bed.gz | 309.58 KB | f52bc57277c9f726e92db0ec5bd183e9 |
| ENCFF262LZH.tabix.bed.gz.dvc | 106.0 B | d4299e2219cbfcb9d60a8a823e6c613d |
| ENCFF262LZH.tabix.bed.gz.tbi | 192.22 KB | f10ff9e3d28c17a49fdb6a309591c363 |
| ENCFF262LZH.tabix.bed.gz.tbi.dvc | 110.0 B | 1556d2bb631f425a157a96c2fdf04b76 |
| genomic_resource.yaml | 2.62 KB | 84c1546fb505817640232bf86c638b05 |
| genomic_resource_original.yaml | 2.53 KB | c0dcf5b840451dbb1676e41b3fe8b9d2 |
| statistics/ |