DNase-seq_ENCSR246VSO
DNase-seq ENCSR246VSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"]
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| Id: | DNase-seq/ENCSR246VSO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR246VSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF556BGQ|/files/ENCFF556BGQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR246VSO | float |
DNase-seq_ENCSR246VSO |
DNase-seq ENCSR246VSO [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)"]
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[0.0681, 36.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF528XPM.bed.gz | 835.52 KB | f0da45d9cf8f7d0d13be13a44398766a |
| ENCFF528XPM.bed.gz.dvc | 100.0 B | 0d5deb2d45c6a0e60a8ac1299babb216 |
| ENCFF528XPM.tabix.bed.gz | 758.63 KB | 69c66cde8e3a5dba24ba8e2e4e6194d8 |
| ENCFF528XPM.tabix.bed.gz.dvc | 106.0 B | e49f74c2894ac8a2708bea2460b1bc30 |
| ENCFF528XPM.tabix.bed.gz.tbi | 316.59 KB | f714cee21c316ddaf2e37e2aebb355a1 |
| ENCFF528XPM.tabix.bed.gz.tbi.dvc | 110.0 B | cd624c86d8e30843dfa3634f6272b0d0 |
| genomic_resource.yaml | 2.08 KB | 76bef4f992b2b8a62e79a77742e46078 |
| genomic_resource_original.yaml | 1.96 KB | 0e81229069ae6bbc210aff521143ffeb |
| statistics/ |