Resource

Id DNase-seq/ENCSR242CLAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR242CLA [biosample_summary="Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
Description
Labels
  • accession: ENCSR242CLA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0004148/
  • biosample_summary: Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • date_created: 2021-08-23T23:11:17.962128+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR242CLA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR242CLA float

DNase-seq_ENCSR242CLA
DNase-seq ENCSR242CLA [biosample_summary="Homo sapiens activated CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR242CLA [0.0674, 35.5]
n
13,338,448
mean
2.74
sd
3.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133384480.41% 63934
chr1 1272137 0.51% 5996
chr2 1049468 0.43% 5050
chr3 669209 0.34% 3182
chr4 422911 0.22% 1997
chr5 611176 0.34% 2914
chr6 657340 0.38% 3086
chr7 647385 0.41% 3146
chr8 529286 0.36% 2652
chr9 546919 0.40% 2635
chr10 662321 0.50% 3142
chr11 781732 0.58% 3792
chr12 572089 0.43% 2671
chr13 236163 0.21% 1123
chr14 476184 0.44% 2287
chr15 448313 0.44% 2191
chr16 545670 0.60% 2626
chr17 832768 1.00% 4052
chr18 223189 0.28% 1064
chr19 735512 1.25% 3457
chr20 379643 0.59% 1878
chr21 223794 0.48% 1069
chr22 467510 0.92% 2300
chrX 347309 0.22% 1621
chrY 420 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63934 1 1024 208.63 200
global segment-length histogram

Files

Filename Size md5
ENCFF275TRN.bed.gz 684.32 KB 67c64eae54dcb0247d37a7c2eb31c4b9
ENCFF275TRN.tabix.bed.gz 636.96 KB e1bca8ffa06d583eac3732f18ffa8fce
ENCFF275TRN.tabix.bed.gz.tbi 218.66 KB 21c81d57341e7b69cfb3a83f3bba4b32
genomic_resource.yaml 1.87 KB 1cbc4bff92fccc7f24d4a5999eea4fe0
statistics/