DNase-seq_ENCSR241BNZ
DNase-seq ENCSR241BNZ [biosample_summary="Homo sapiens CD14-positive monocyte male adult (30 years)"]
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| Id: | DNase-seq/ENCSR241BNZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR241BNZ [biosample_summary="Homo sapiens CD14-positive monocyte male adult (30 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (30 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF568RGF|/files/ENCFF568RGF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR241BNZ | float |
DNase-seq_ENCSR241BNZ |
DNase-seq ENCSR241BNZ [biosample_summary="Homo sapiens CD14-positive monocyte male adult (30 years)"]
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[0.045, 32] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF834PXB.bed.gz | 954.48 KB | a6498ecbce2bb4db5012e366fb9955e5 |
| ENCFF834PXB.bed.gz.dvc | 100.0 B | 8bb918943591174b4acc5d5b552238a7 |
| ENCFF834PXB.tabix.bed.gz | 877.62 KB | 84e0a97442bfcc386ce60ddb645318dc |
| ENCFF834PXB.tabix.bed.gz.dvc | 106.0 B | 5cea36c79a0e7389ee60f6a4af52cf36 |
| ENCFF834PXB.tabix.bed.gz.tbi | 251.11 KB | e26768d24783f97b994c34bfcae3713c |
| ENCFF834PXB.tabix.bed.gz.tbi.dvc | 110.0 B | 61cf7087ca8df97cb830bd173ffc1598 |
| genomic_resource.yaml | 2.04 KB | 54c0057c35b0ef8c8d15cdb35027d436 |
| genomic_resource_original.yaml | 1.94 KB | b329c07555dea4e995c2c964f3e2ecc0 |
| statistics/ |