| Id: | DNase-seq/ENCSR240TPI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR240TPI [biosample_summary="Homo sapiens ELR"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF518EFO|/files/ENCFF518EFO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39347696 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR240TPI | float |
DNase-seq_ENCSR240TPI |
DNase-seq ENCSR240TPI [biosample_summary="Homo sapiens ELR"]
|
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[0.0175, 34.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF127SQZ.bed.gz | 2.82 MB | 9a7526cf3fd56c27990ef7afbdb03411 |
| ENCFF127SQZ.bed.gz.dvc | 101.0 B | e76f27e49df362f633918144e67687e0 |
| ENCFF127SQZ.tabix.bed.gz | 2.58 MB | a9014994e84b90da5b602070b87b4f96 |
| ENCFF127SQZ.tabix.bed.gz.dvc | 107.0 B | 6373dfa71554b98e202fdd074a7af3bb |
| ENCFF127SQZ.tabix.bed.gz.tbi | 704.18 KB | bdc6222157cd0e22b39e08405b05c578 |
| ENCFF127SQZ.tabix.bed.gz.tbi.dvc | 110.0 B | 7c66a6ab9ab77b2b8db7329bd3239958 |
| genomic_resource.yaml | 1.69 KB | 24b359209bf9958d917db7443d30877a |
| genomic_resource_original.yaml | 1.62 KB | 15e730aab7a86768c66b7ccde5b7f2dd |
| statistics/ |