Resource

Id DNase-seq/ENCSR239XNUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR239XNU [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell male adult (43 years)"]
Description
Labels
  • accession: ENCSR239XNU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell male adult (43 years)
  • date_created: 2019-08-24T00:09:40.572724+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR239XNU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR239XNU float

DNase-seq_ENCSR239XNU
DNase-seq ENCSR239XNU [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell male adult (43 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR239XNU [0.0496, 105]
n
16,507,333
mean
4.29
sd
8.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 165073330.51% 95686
chr1 1567999 0.63% 8949
chr2 1109731 0.46% 6562
chr3 861745 0.43% 5108
chr4 633079 0.33% 3953
chr5 701347 0.39% 4197
chr6 854830 0.50% 4884
chr7 722338 0.45% 4288
chr8 665214 0.46% 3927
chr9 744392 0.54% 4383
chr10 691313 0.52% 3950
chr11 969790 0.72% 5532
chr12 726294 0.54% 4173
chr13 335290 0.29% 2030
chr14 576001 0.54% 3285
chr15 459019 0.45% 2634
chr16 719757 0.80% 4073
chr17 1016666 1.22% 5593
chr18 243659 0.30% 1459
chr19 1220294 2.08% 6664
chr20 459712 0.71% 2634
chr21 232668 0.50% 1402
chr22 467603 0.92% 2646
chrX 502589 0.32% 3160
chrY 26003 0.05% 200
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 95686 4 760 172.52 174
global segment-length histogram

Files

Filename Size md5
ENCFF749FDY.bed.gz 1.03 MB 617eb58960a36b8306df798128fe1b29
ENCFF749FDY.tabix.bed.gz 957.25 KB df18c3c0208052fc810eecdc5d8f6d69
ENCFF749FDY.tabix.bed.gz.tbi 302.29 KB ea7e8eac3add2752af41fd1cbc661520
genomic_resource.yaml 1.28 KB ad8cf138c6decff36be292297eecd3f4
statistics/