DNase-seq_ENCSR239MQN
DNase-seq ENCSR239MQN [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"]
×
| Id: | DNase-seq/ENCSR239MQN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR239MQN [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF265VQM|/files/ENCFF265VQM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR239MQN | float |
DNase-seq_ENCSR239MQN |
DNase-seq ENCSR239MQN [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"]
|
|
[0.0944, 24.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF067LRX.bed.gz | 828.67 KB | 811983c3b4f93d1839cd00ceb520c1c4 |
| ENCFF067LRX.bed.gz.dvc | 100.0 B | 71a454e10fb704a6874c9369d1f3fc25 |
| ENCFF067LRX.tabix.bed.gz | 747.78 KB | 728c183fca230379eb137762a01d5098 |
| ENCFF067LRX.tabix.bed.gz.dvc | 106.0 B | 65a190cebf9bd8181e0ae1064d9f3d0e |
| ENCFF067LRX.tabix.bed.gz.tbi | 365.48 KB | 6eb80d994866032eb38f371a9b273ee9 |
| ENCFF067LRX.tabix.bed.gz.tbi.dvc | 110.0 B | 088c3f919154757a8260236b03c02de5 |
| genomic_resource.yaml | 2.07 KB | 6e91fb4c609539985dd3f214dc154a67 |
| genomic_resource_original.yaml | 1.96 KB | b03a34084b614bc181428bfbe5802f7d |
| statistics/ |