Resource

Id DNase-seq/ENCSR238FMPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR238FMP [biosample_summary="Homo sapiens heart right ventricle tissue male adult (40 years)"]
Description
Labels
  • accession: ENCSR238FMP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002080/
  • biosample_summary: Homo sapiens heart right ventricle tissue male adult (40 years)
  • date_created: 2019-11-01T17:50:57.750911+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR238FMP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR238FMP float

DNase-seq_ENCSR238FMP

DNase-seq ENCSR238FMP [biosample_summary="Homo sapiens heart right ventricle tissue male adult (40 years)"]
HISTOGRAM FOR DNase-seq_ENCSR238FMP [0.0818, 62]
n
16,720,329
mean
4.1
sd
5.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 167203290.52% 89447
chr1 1603186 0.64% 8591
chr2 1175077 0.49% 6380
chr3 859625 0.43% 4673
chr4 647725 0.34% 3483
chr5 792575 0.44% 4268
chr6 754171 0.44% 4084
chr7 815637 0.51% 4359
chr8 725954 0.50% 3953
chr9 822921 0.59% 4332
chr10 800072 0.60% 4289
chr11 1008175 0.75% 5301
chr12 767631 0.58% 4114
chr13 329958 0.29% 1796
chr14 549012 0.51% 2915
chr15 514554 0.50% 2803
chr16 715529 0.79% 3739
chr17 942092 1.13% 4959
chr18 275392 0.34% 1555
chr19 869243 1.48% 4514
chr20 587882 0.91% 3141
chr21 281948 0.60% 1446
chr22 484898 0.95% 2580
chrX 383362 0.25% 2092
chrY 13710 0.02% 80
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89447 1 960 186.93 180
global segment-length histogram

Files

Filename Size md5
ENCFF979JED.bed.gz 995.82 KB 64eb9b5f9e20a2d301fd16cfbbf5e110
ENCFF979JED.tabix.bed.gz 906.28 KB 782949365885310f5eacd953ba582141
ENCFF979JED.tabix.bed.gz.tbi 326.14 KB 1bd7e50b4c457a6b348243c8bc0ff801
genomic_resource.yaml 1.24 KB ccaa7e51f05fce729094ca0666b15697
statistics/