Resource

Id DNase-seq/ENCSR234VLIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR234VLI [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (87 years)"]
Description
Labels
  • accession: ENCSR234VLI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (87 years)
  • date_created: 2020-12-10T18:27:50.832295+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR234VLI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (87 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR234VLI float

DNase-seq_ENCSR234VLI
DNase-seq ENCSR234VLI [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (87 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR234VLI [0.0379, 26.5]
n
18,940,013
mean
2.31
sd
2.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189400130.59% 103611
chr1 1823993 0.73% 9831
chr2 1405104 0.58% 7763
chr3 1121985 0.57% 6143
chr4 789561 0.42% 4330
chr5 957418 0.53% 5278
chr6 1024040 0.60% 5606
chr7 941660 0.59% 5188
chr8 822859 0.57% 4563
chr9 824952 0.60% 4494
chr10 903130 0.67% 4940
chr11 1034174 0.77% 5661
chr12 923518 0.69% 5014
chr13 442167 0.39% 2461
chr14 619407 0.58% 3416
chr15 610861 0.60% 3348
chr16 754428 0.84% 4099
chr17 946510 1.14% 5122
chr18 368021 0.46% 2055
chr19 916057 1.56% 4799
chr20 559510 0.87% 3126
chr21 211730 0.45% 1172
chr22 422323 0.83% 2323
chrX 497603 0.32% 2770
chrY 19002 0.03% 109
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103611 1 840 182.8 180
global segment-length histogram

Files

Filename Size md5
ENCFF299CHI.bed.gz 1.12 MB 6a52c16027ac6ec3c5348df5c7bc2aa0
ENCFF299CHI.tabix.bed.gz 1.02 MB 80b91daeda5664086556b54e5aa2f14f
ENCFF299CHI.tabix.bed.gz.tbi 428.27 KB adf388a0fe1d6f58325c980be0ea57ec
genomic_resource.yaml 1.25 KB ffbf467ee106e8d2421ac52841e26d64
statistics/