Resource

Id DNase-seq/ENCSR232NLAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR232NLA [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years)"]
Description
Labels
  • accession: ENCSR232NLA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years)
  • date_created: 2021-08-24T22:56:06.015351+00:00
  • date_released: 2021-11-04
  • doi: 10.17989/ENCSR232NLA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (35 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR232NLA float

DNase-seq_ENCSR232NLA
DNase-seq ENCSR232NLA [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR232NLA [0.0364, 32.6]
n
14,787,817
mean
2.76
sd
3.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 147878170.46% 69711
chr1 1459856 0.59% 6787
chr2 1222831 0.50% 5833
chr3 781635 0.39% 3679
chr4 481450 0.25% 2233
chr5 683460 0.38% 3232
chr6 769594 0.45% 3610
chr7 650280 0.41% 3125
chr8 589153 0.41% 2810
chr9 630841 0.46% 2988
chr10 731918 0.55% 3556
chr11 802451 0.59% 3821
chr12 686738 0.52% 3192
chr13 262880 0.23% 1223
chr14 531603 0.50% 2509
chr15 548443 0.54% 2655
chr16 582021 0.64% 2707
chr17 888865 1.07% 4134
chr18 239857 0.30% 1139
chr19 819487 1.40% 3727
chr20 421375 0.65% 2017
chr21 207844 0.44% 986
chr22 389883 0.77% 1856
chrX 390393 0.25% 1821
chrY 14959 0.03% 71
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69711 1 1040 212.13 200
global segment-length histogram

Files

Filename Size md5
ENCFF245CKB.bed.gz 760.96 KB 69ec8a1e3ca32cf16ee4f655e9a7be29
ENCFF245CKB.tabix.bed.gz 703.51 KB e2e22f8a67d1d05cde26b0b67b4cffff
ENCFF245CKB.tabix.bed.gz.tbi 251.49 KB 9a384730948f2b7dc74451a61ccc6e0f
genomic_resource.yaml 1.32 KB a702e49892a05b0bf6b9831fa79b55b1
statistics/