DNase-seq_ENCSR229BGG
DNase-seq ENCSR229BGG [biosample_summary="Homo sapiens memory B cell male adult (40 years)"]
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| Id: | DNase-seq/ENCSR229BGG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR229BGG [biosample_summary="Homo sapiens memory B cell male adult (40 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF731UJO|/files/ENCFF731UJO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR229BGG | float |
DNase-seq_ENCSR229BGG |
DNase-seq ENCSR229BGG [biosample_summary="Homo sapiens memory B cell male adult (40 years)"]
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[0.0784, 20.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF370BCZ.bed.gz | 604.68 KB | 3dd44de298825b8b0e3e1679239ec6b2 |
| ENCFF370BCZ.bed.gz.dvc | 100.0 B | bac3935f204d019b926a9b10935168e4 |
| ENCFF370BCZ.tabix.bed.gz | 557.13 KB | 58bb965b0abf0be5c3eddf34371ba4fa |
| ENCFF370BCZ.tabix.bed.gz.dvc | 106.0 B | f71ce9be253fb63fd6cd292902eff2de |
| ENCFF370BCZ.tabix.bed.gz.tbi | 264.46 KB | 94e52b1df9df7daf29e1d1a51d85c340 |
| ENCFF370BCZ.tabix.bed.gz.tbi.dvc | 110.0 B | b93d938d4bf7c937f4d661cf781f215f |
| genomic_resource.yaml | 2.01 KB | 362f7276a5bbb5aad6dfb99b79fec80c |
| genomic_resource_original.yaml | 1.92 KB | 60501419308198bab8b18d57d62a91b5 |
| statistics/ |