DNase-seq_ENCSR228BOM
DNase-seq ENCSR228BOM [biosample_summary="Homo sapiens right lung tissue male embryo (115 days)"]
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| Id: | DNase-seq/ENCSR228BOM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR228BOM [biosample_summary="Homo sapiens right lung tissue male embryo (115 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (115 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN430MOH|/analyses/ENCAN430MOH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF725BGI|/files/ENCFF725BGI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38538906 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF595LDQ|/files/ENCFF595LDQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38254744 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR228BOM | float |
DNase-seq_ENCSR228BOM |
DNase-seq ENCSR228BOM [biosample_summary="Homo sapiens right lung tissue male embryo (115 days)"]
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[3, 1.13e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF516FXF.bed.gz | 1019.5 KB | 6b67b6cfdebf4625e89b094580f804c6 |
| ENCFF516FXF.bed.gz.dvc | 101.0 B | d28b3a72aea10f27515660972f48ed3d |
| ENCFF516FXF.tabix.bed.gz | 875.29 KB | efd79c1842379109b56ccac205e9b690 |
| ENCFF516FXF.tabix.bed.gz.dvc | 106.0 B | 916edab9cc91363b4bf963e5772c0ff9 |
| ENCFF516FXF.tabix.bed.gz.tbi | 496.94 KB | 4f08df3f7d5a6d20bb4326f942a6e26b |
| ENCFF516FXF.tabix.bed.gz.tbi.dvc | 110.0 B | 7761b83ed378a20158730701e1548e72 |
| genomic_resource.yaml | 2.59 KB | ac38912d7f4fc9f8c2770414ba2db542 |
| genomic_resource_original.yaml | 2.49 KB | 016e0d1848eda52adba55724e1672c8c |
| statistics/ |