Resource
| Id | DNase-seq/ENCSR228BOM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR228BOM [biosample_summary="Homo sapiens right lung tissue male embryo (115 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (115 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN430MOH|/analyses/ENCAN430MOH/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF725BGI|/files/ENCFF725BGI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38538906 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF595LDQ|/files/ENCFF595LDQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38254744 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR228BOM | float |
DNase-seq_ENCSR228BOM |
DNase-seq ENCSR228BOM [biosample_summary="Homo sapiens right lung tissue male embryo (115 days)"]
|
 |
[3, 1.13e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15771566 | 0.49% | 104823 |
| chr1 | 1404738 | 0.56% | 9343 |
| chr2 | 1301924 | 0.54% | 8654 |
| chr3 | 1086387 | 0.55% | 7219 |
| chr4 | 872810 | 0.46% | 5800 |
| chr5 | 919096 | 0.51% | 6092 |
| chr6 | 972990 | 0.57% | 6469 |
| chr7 | 827263 | 0.52% | 5499 |
| chr8 | 747759 | 0.52% | 4973 |
| chr9 | 665896 | 0.48% | 4424 |
| chr10 | 779984 | 0.58% | 5187 |
| chr11 | 784407 | 0.58% | 5216 |
| chr12 | 781702 | 0.59% | 5191 |
| chr13 | 472740 | 0.41% | 3140 |
| chr14 | 497540 | 0.46% | 3312 |
| chr15 | 503838 | 0.49% | 3350 |
| chr16 | 465566 | 0.52% | 3095 |
| chr17 | 593802 | 0.71% | 3942 |
| chr18 | 368577 | 0.46% | 2451 |
| chr19 | 454067 | 0.77% | 3020 |
| chr20 | 385914 | 0.60% | 2570 |
| chr21 | 184170 | 0.39% | 1222 |
| chr22 | 245638 | 0.48% | 1636 |
| chrX | 434508 | 0.28% | 2886 |
| chrY | 20250 | 0.04% | 132 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104823 | 1 | 523 | 150.46 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF516FXF.bed.gz | 1019.5 KB | 6b67b6cfdebf4625e89b094580f804c6 |
| ENCFF516FXF.tabix.bed.gz | 875.29 KB | efd79c1842379109b56ccac205e9b690 |
| ENCFF516FXF.tabix.bed.gz.tbi | 496.94 KB | 4f08df3f7d5a6d20bb4326f942a6e26b |
| genomic_resource.yaml | 2.59 KB | ac38912d7f4fc9f8c2770414ba2db542 |
| statistics/ |