Resource

Id DNase-seq/ENCSR226LVBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR226LVB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
Description
Labels
  • accession: ENCSR226LVB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • date_created: 2020-04-20T23:46:01.959605+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR226LVB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR226LVB float

DNase-seq_ENCSR226LVB
DNase-seq ENCSR226LVB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR226LVB [0.328, 59.9]
n
9,633,901
mean
6.6
sd
6.96

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96339010.30% 54055
chr1 969981 0.39% 5426
chr2 695299 0.29% 3945
chr3 540070 0.27% 3046
chr4 340591 0.18% 1925
chr5 444207 0.24% 2534
chr6 574758 0.34% 3232
chr7 436927 0.27% 2463
chr8 371515 0.26% 2110
chr9 400204 0.29% 2226
chr10 441339 0.33% 2511
chr11 478811 0.35% 2702
chr12 495795 0.37% 2767
chr13 195004 0.17% 1069
chr14 327681 0.31% 1839
chr15 324447 0.32% 1843
chr16 389981 0.43% 2144
chr17 559179 0.67% 3109
chr18 157689 0.20% 905
chr19 609434 1.04% 3279
chr20 265306 0.41% 1531
chr21 115916 0.25% 644
chr22 231609 0.46% 1287
chrX 259079 0.17% 1461
chrY 9079 0.02% 57
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54055 5 820 178.22 179
global segment-length histogram

Files

Filename Size md5
ENCFF209MTG.bed.gz 590.3 KB 36f5fba34628803992beb30e7ca12184
ENCFF209MTG.tabix.bed.gz 532.17 KB 4c4c40c3aebad9cfad755c4c05f05648
ENCFF209MTG.tabix.bed.gz.tbi 261.06 KB 03b97bdb95f8b92f05d2538defa775d7
genomic_resource.yaml 2.44 KB 8d28567382fc72b36a1589800c99b6d5
statistics/