| Id: | DNase-seq/ENCSR226LVB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR226LVB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF431XJH|/files/ENCFF431XJH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30544932 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR226LVB | float |
DNase-seq_ENCSR226LVB |
DNase-seq ENCSR226LVB [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
|
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[0.328, 59.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF209MTG.bed.gz | 590.3 KB | 36f5fba34628803992beb30e7ca12184 |
| ENCFF209MTG.bed.gz.dvc | 100.0 B | 9412ab1cf0ff4d99700a120f9d1961cb |
| ENCFF209MTG.tabix.bed.gz | 532.17 KB | 4c4c40c3aebad9cfad755c4c05f05648 |
| ENCFF209MTG.tabix.bed.gz.dvc | 106.0 B | 6ffb755b6bad78434283e4fe9bb59abd |
| ENCFF209MTG.tabix.bed.gz.tbi | 261.06 KB | 03b97bdb95f8b92f05d2538defa775d7 |
| ENCFF209MTG.tabix.bed.gz.tbi.dvc | 110.0 B | df145691abb49fe17b8efc34e8105f10 |
| genomic_resource.yaml | 2.44 KB | 8d28567382fc72b36a1589800c99b6d5 |
| genomic_resource_original.yaml | 2.21 KB | 85f43f9f58e6a6bb415ffc0f0489eaa8 |
| statistics/ |