DNase-seq_ENCSR224FOA
DNase-seq ENCSR224FOA [biosample_summary="Homo sapiens islet precursor cell"]
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| Id: | DNase-seq/ENCSR224FOA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR224FOA [biosample_summary="Homo sapiens islet precursor cell"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (5 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN900MPY|/analyses/ENCAN900MPY/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF957MNB|/files/ENCFF957MNB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR224FOA | float |
DNase-seq_ENCSR224FOA |
DNase-seq ENCSR224FOA [biosample_summary="Homo sapiens islet precursor cell"]
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[1, 2.45e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF366HLY.bed.gz | 4.58 MB | 21f864e7716cd9a379e59b940f93eb2e |
| ENCFF366HLY.bed.gz.dvc | 101.0 B | f593f5eb910b68593605d6c1b1717eb1 |
| ENCFF366HLY.tabix.bed.gz | 3.93 MB | 84fa7e8959f86db5b35e7bff68215c26 |
| ENCFF366HLY.tabix.bed.gz.dvc | 107.0 B | e56cee581237b953b0581f9f6b1d6460 |
| ENCFF366HLY.tabix.bed.gz.tbi | 798.19 KB | 15f010a7bdc26e155757b8e47c6c4deb |
| ENCFF366HLY.tabix.bed.gz.tbi.dvc | 110.0 B | 87ebcb7380179f395b28377d7de60ea6 |
| genomic_resource.yaml | 2.15 KB | 28b4286fd015cd8302196528a5ee21e9 |
| genomic_resource_original.yaml | 2.07 KB | 0a6d8c9205d5ca55497a89e2fbb4e7e3 |
| statistics/ |