Resource
| Id | DNase-seq/ENCSR221ROM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR221ROM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF639BBF|/files/ENCFF639BBF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR221ROM | float |
DNase-seq_ENCSR221ROM |
DNase-seq ENCSR221ROM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.113, 15.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7106937 | 0.22% | 38140 |
| chr1 | 664573 | 0.27% | 3564 |
| chr2 | 520898 | 0.22% | 2826 |
| chr3 | 398609 | 0.20% | 2158 |
| chr4 | 283740 | 0.15% | 1535 |
| chr5 | 330789 | 0.18% | 1833 |
| chr6 | 341944 | 0.20% | 1863 |
| chr7 | 312167 | 0.20% | 1684 |
| chr8 | 330605 | 0.23% | 1807 |
| chr9 | 335466 | 0.24% | 1783 |
| chr10 | 368382 | 0.28% | 1976 |
| chr11 | 413679 | 0.31% | 2258 |
| chr12 | 338313 | 0.25% | 1823 |
| chr13 | 130402 | 0.11% | 686 |
| chr14 | 240419 | 0.22% | 1295 |
| chr15 | 227538 | 0.22% | 1224 |
| chr16 | 281275 | 0.31% | 1471 |
| chr17 | 364147 | 0.44% | 1962 |
| chr18 | 127026 | 0.16% | 687 |
| chr19 | 403030 | 0.69% | 2021 |
| chr20 | 215490 | 0.33% | 1178 |
| chr21 | 90357 | 0.19% | 485 |
| chr22 | 225800 | 0.44% | 1179 |
| chrX | 161234 | 0.10% | 834 |
| chrY | 1054 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38140 | 3 | 1080 | 186.34 | 182 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF491YIR.bed.gz | 420.61 KB | 722329c63d76758b57e02187e2fb52d1 |
| ENCFF491YIR.tabix.bed.gz | 379.53 KB | 8485a0cf3d4310f8bf95e5409221f9a0 |
| ENCFF491YIR.tabix.bed.gz.tbi | 198.63 KB | fdc580501046514430bc75ffb5cba0fc |
| genomic_resource.yaml | 2.15 KB | 6276da049c94597882c216be72d8f798 |
| statistics/ |