DNase-seq_ENCSR221ROM
DNase-seq ENCSR221ROM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR221ROM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR221ROM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF639BBF|/files/ENCFF639BBF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR221ROM | float |
DNase-seq_ENCSR221ROM |
DNase-seq ENCSR221ROM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.113, 15.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF491YIR.bed.gz | 420.61 KB | 722329c63d76758b57e02187e2fb52d1 |
| ENCFF491YIR.bed.gz.dvc | 100.0 B | 36a37fca8b1df5f868c8d3d4e4cc34e8 |
| ENCFF491YIR.tabix.bed.gz | 379.53 KB | 8485a0cf3d4310f8bf95e5409221f9a0 |
| ENCFF491YIR.tabix.bed.gz.dvc | 106.0 B | f9299352f0667b56673929b84e4e2666 |
| ENCFF491YIR.tabix.bed.gz.tbi | 198.63 KB | fdc580501046514430bc75ffb5cba0fc |
| ENCFF491YIR.tabix.bed.gz.tbi.dvc | 110.0 B | ee5fe47048ac7395e7210ae8fa9123b0 |
| genomic_resource.yaml | 2.15 KB | 6276da049c94597882c216be72d8f798 |
| genomic_resource_original.yaml | 2.02 KB | 53f8ce970a07fe0e028f0259d4e7bf2f |
| statistics/ |