Resource

Id DNase-seq/ENCSR219KTWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR219KTW [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
Description
Labels
  • accession: ENCSR219KTW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours
  • date_created: 2020-04-19T18:36:51.434072+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR219KTW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR219KTW float

DNase-seq_ENCSR219KTW
DNase-seq ENCSR219KTW [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR219KTW [0.256, 50.3]
n
10,506,776
mean
6.26
sd
6.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 105067760.33% 55762
chr1 1058397 0.43% 5599
chr2 747161 0.31% 3982
chr3 587519 0.30% 3121
chr4 366056 0.19% 1929
chr5 472941 0.26% 2548
chr6 614229 0.36% 3234
chr7 482312 0.30% 2563
chr8 395889 0.27% 2175
chr9 443927 0.32% 2368
chr10 472378 0.35% 2543
chr11 522146 0.39% 2765
chr12 536691 0.40% 2846
chr13 209855 0.18% 1106
chr14 353889 0.33% 1881
chr15 357169 0.35% 1907
chr16 437108 0.48% 2298
chr17 616970 0.74% 3206
chr18 177921 0.22% 934
chr19 685758 1.17% 3532
chr20 303107 0.47% 1640
chr21 121785 0.26% 662
chr22 254959 0.50% 1374
chrX 278633 0.18% 1497
chrY 9976 0.02% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55762 2 880 188.42 180
global segment-length histogram

Files

Filename Size md5
ENCFF524MPM.bed.gz 611.8 KB 1f7424080378596ffe7517ffccf30b53
ENCFF524MPM.tabix.bed.gz 555.03 KB b23c29a47e39421187e84d2388d7e2d6
ENCFF524MPM.tabix.bed.gz.tbi 262.62 KB 30d51f221d29263c8c9c618d404828f4
genomic_resource.yaml 2.14 KB fe368dc14c0602224cf64571336ab7c0
statistics/