DNase-seq_ENCSR219KTW
DNase-seq ENCSR219KTW [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
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| Id: | DNase-seq/ENCSR219KTW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR219KTW [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF272CLG|/files/ENCFF272CLG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 39135530 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR219KTW | float |
DNase-seq_ENCSR219KTW |
DNase-seq ENCSR219KTW [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
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[0.256, 50.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF524MPM.bed.gz | 611.8 KB | 1f7424080378596ffe7517ffccf30b53 |
| ENCFF524MPM.bed.gz.dvc | 100.0 B | e0ca7e4a250354a7e56ecab310fb00cd |
| ENCFF524MPM.tabix.bed.gz | 555.03 KB | b23c29a47e39421187e84d2388d7e2d6 |
| ENCFF524MPM.tabix.bed.gz.dvc | 106.0 B | 5f885650190073941b3cd25a00e42475 |
| ENCFF524MPM.tabix.bed.gz.tbi | 262.62 KB | 30d51f221d29263c8c9c618d404828f4 |
| ENCFF524MPM.tabix.bed.gz.tbi.dvc | 110.0 B | 34d881b7f714902ac063551c40bb1649 |
| genomic_resource.yaml | 2.14 KB | fe368dc14c0602224cf64571336ab7c0 |
| genomic_resource_original.yaml | 1.99 KB | b5b5fe80838ea8652b262262d1183413 |
| statistics/ |