DNase-seq_ENCSR218FJD
DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
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| Id: | DNase-seq/ENCSR218FJD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (30 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF285DGZ|/files/ENCFF285DGZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR218FJD | float |
DNase-seq_ENCSR218FJD |
DNase-seq ENCSR218FJD [biosample_summary="Homo sapiens T-cell male adult (30 years)"]
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[0.164, 28.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF201SWK.bed.gz | 372.86 KB | 1f5c2f8f3425c76f22e17d339de76654 |
| ENCFF201SWK.bed.gz.dvc | 100.0 B | 76b7dde1b3f86c8d214aa7a774355bd3 |
| ENCFF201SWK.tabix.bed.gz | 340.09 KB | 8d107cfd5dc3bec8d16a312cbc3f88a0 |
| ENCFF201SWK.tabix.bed.gz.dvc | 106.0 B | f4eb2f5e4e44248ed0dde8410c007385 |
| ENCFF201SWK.tabix.bed.gz.tbi | 179.97 KB | 006ae883a69044f61760798f9706ffa9 |
| ENCFF201SWK.tabix.bed.gz.tbi.dvc | 110.0 B | e3420ae43d5708fe8c88c1c6f03b3232 |
| genomic_resource.yaml | 2.0 KB | 0eb12066951f728ddaccf50385a9e24a |
| genomic_resource_original.yaml | 1.91 KB | 5afbeb91426fe181c2251bc096cea8ee |
| statistics/ |