Resource

Id DNase-seq/ENCSR217YRJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR217YRJ [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (120 days)"]
Description
Labels
  • accession: ENCSR217YRJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001774/
  • biosample_summary: Homo sapiens muscle of trunk tissue female embryo (120 days)
  • date_created: 2015-09-16T21:42:41.595283+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR217YRJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR217YRJ float

DNase-seq_ENCSR217YRJ

DNase-seq ENCSR217YRJ [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (120 days)"]
HISTOGRAM FOR DNase-seq_ENCSR217YRJ [0.233, 39.2]
n
11,713,961
mean
3.61
sd
4.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117139610.36% 66705
chr1 1049084 0.42% 5984
chr2 944856 0.39% 5418
chr3 764007 0.39% 4386
chr4 581906 0.31% 3387
chr5 648941 0.36% 3733
chr6 719627 0.42% 4097
chr7 589825 0.37% 3394
chr8 554393 0.38% 3160
chr9 490756 0.35% 2747
chr10 573237 0.43% 3292
chr11 598452 0.44% 3380
chr12 591720 0.44% 3332
chr13 323469 0.28% 1859
chr14 377544 0.35% 2130
chr15 376254 0.37% 2144
chr16 361914 0.40% 2057
chr17 483812 0.58% 2723
chr18 257944 0.32% 1513
chr19 447414 0.76% 2356
chr20 295021 0.46% 1673
chr21 140229 0.30% 809
chr22 198497 0.39% 1138
chrX 344788 0.22% 1991
chrY 271 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66705 1 740 175.61 179
global segment-length histogram

Files

Filename Size md5
ENCFF289RTF.bed.gz 715.26 KB 2f1c7c4aec7595a74f4cdeb4b144ff50
ENCFF289RTF.tabix.bed.gz 635.92 KB 929e22e9a45e72c2a1a121b631e4b6e2
ENCFF289RTF.tabix.bed.gz.tbi 363.38 KB aab1e2325c8e4f809df44cbb67b7cb9a
genomic_resource.yaml 1.85 KB c4a531b9e6f3a82ed796f1497281f564
statistics/