Resource
| Id | DNase-seq/ENCSR217YRJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR217YRJ [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (120 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (120 days) output_type: peaks audit_warning: Alignment file {ENCFF057YLB|/files/ENCFF057YLB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30057126 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR217YRJ | float |
DNase-seq_ENCSR217YRJ |
DNase-seq ENCSR217YRJ [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (120 days)"]
|
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[0.233, 39.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11713961 | 0.36% | 66705 |
| chr1 | 1049084 | 0.42% | 5984 |
| chr2 | 944856 | 0.39% | 5418 |
| chr3 | 764007 | 0.39% | 4386 |
| chr4 | 581906 | 0.31% | 3387 |
| chr5 | 648941 | 0.36% | 3733 |
| chr6 | 719627 | 0.42% | 4097 |
| chr7 | 589825 | 0.37% | 3394 |
| chr8 | 554393 | 0.38% | 3160 |
| chr9 | 490756 | 0.35% | 2747 |
| chr10 | 573237 | 0.43% | 3292 |
| chr11 | 598452 | 0.44% | 3380 |
| chr12 | 591720 | 0.44% | 3332 |
| chr13 | 323469 | 0.28% | 1859 |
| chr14 | 377544 | 0.35% | 2130 |
| chr15 | 376254 | 0.37% | 2144 |
| chr16 | 361914 | 0.40% | 2057 |
| chr17 | 483812 | 0.58% | 2723 |
| chr18 | 257944 | 0.32% | 1513 |
| chr19 | 447414 | 0.76% | 2356 |
| chr20 | 295021 | 0.46% | 1673 |
| chr21 | 140229 | 0.30% | 809 |
| chr22 | 198497 | 0.39% | 1138 |
| chrX | 344788 | 0.22% | 1991 |
| chrY | 271 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66705 | 1 | 740 | 175.61 | 179 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF289RTF.bed.gz | 715.26 KB | 2f1c7c4aec7595a74f4cdeb4b144ff50 |
| ENCFF289RTF.tabix.bed.gz | 635.92 KB | 929e22e9a45e72c2a1a121b631e4b6e2 |
| ENCFF289RTF.tabix.bed.gz.tbi | 363.38 KB | aab1e2325c8e4f809df44cbb67b7cb9a |
| genomic_resource.yaml | 1.85 KB | c4a531b9e6f3a82ed796f1497281f564 |
| statistics/ |
