Resource

Id DNase-seq/ENCSR217TAWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR217TAW [biosample_summary="Homo sapiens GM23248"]
Description
Labels
  • accession: ENCSR217TAW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005723/
  • biosample_summary: Homo sapiens GM23248
  • date_created: 2014-09-26T06:22:27.799240+00:00
  • date_released: 2015-06-17
  • doi: 10.17989/ENCSR217TAW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR217TAW float

DNase-seq_ENCSR217TAW
DNase-seq ENCSR217TAW [biosample_summary="Homo sapiens GM23248"]
 HISTOGRAM FOR DNase-seq_ENCSR217TAW [0.02, 21.9]
n
59,148,244
mean
1.73
sd
2.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 591482441.84% 324942
chr1 5549756 2.23% 30520
chr2 5002421 2.07% 27509
chr3 4024944 2.03% 22126
chr4 2917188 1.53% 16356
chr5 3436930 1.89% 18905
chr6 3624399 2.12% 19835
chr7 2965252 1.86% 16364
chr8 2769716 1.91% 15282
chr9 2516333 1.82% 13798
chr10 2853399 2.13% 15746
chr11 2997740 2.22% 16344
chr12 2993938 2.25% 16458
chr13 1507648 1.32% 8360
chr14 1844140 1.72% 10111
chr15 1961803 1.92% 10654
chr16 1710685 1.89% 9329
chr17 2437611 2.93% 13207
chr18 1320394 1.64% 7362
chr19 1806338 3.08% 9697
chr20 1514755 2.35% 8334
chr21 643838 1.38% 3523
chr22 1024099 2.02% 5532
chrX 1635836 1.05% 9074
chrY 89081 0.16% 516
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 324942 1 980 182.03 180
global segment-length histogram

Files

Filename Size md5
ENCFF834PPH.bed.gz 3.52 MB 57f76fb41e31eaf31fb9f5bd0c610102
ENCFF834PPH.tabix.bed.gz 3.21 MB 41f2fc68ef93184ff5b949dfd6e03f39
ENCFF834PPH.tabix.bed.gz.tbi 735.67 KB 1a6e7f6a56854a7aa5891f84e1976f99
genomic_resource.yaml 1.07 KB 0a4b2bb7433ed6cb6ab99439b4ebd682
statistics/