DNase-seq_ENCSR217SET
DNase-seq ENCSR217SET [biosample_summary="Homo sapiens SW480"]
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| Id: | DNase-seq/ENCSR217SET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR217SET [biosample_summary="Homo sapiens SW480"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN714NWB|/analyses/ENCAN714NWB/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF080TUY|/files/ENCFF080TUY/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF242UZF|/files/ENCFF242UZF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR217SET | float |
DNase-seq_ENCSR217SET |
DNase-seq ENCSR217SET [biosample_summary="Homo sapiens SW480"]
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[3, 1.66e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF044QJS.bed.gz | 1.95 MB | 5774fbccfc22f4ac8170be00d9b573e1 |
| ENCFF044QJS.bed.gz.dvc | 101.0 B | b1f3fe3b82e8648e6cf8244111e9e6a2 |
| ENCFF044QJS.tabix.bed.gz | 1.69 MB | 87dd1461f53ce471e2c2386673e883ae |
| ENCFF044QJS.tabix.bed.gz.dvc | 107.0 B | a4119aa095fb89d887b1a337e8876e64 |
| ENCFF044QJS.tabix.bed.gz.tbi | 665.11 KB | ae87bf669ebf357a235c9658c15f55d9 |
| ENCFF044QJS.tabix.bed.gz.tbi.dvc | 110.0 B | 9ece3afe4c1315e74d1a894b09aef47b |
| genomic_resource.yaml | 2.91 KB | 83a9bb99391529caa0c73f1ab23bc87a |
| genomic_resource_original.yaml | 2.84 KB | 2470dcf8f46215c18a572aef61181e76 |
| statistics/ |