Resource

Id DNase-seq/ENCSR217PZPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR217PZP [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
Description
Labels
  • accession: ENCSR217PZP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (26 years)
  • date_created: 2020-04-12T18:59:14.237913+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR217PZP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR217PZP float

DNase-seq_ENCSR217PZP

DNase-seq ENCSR217PZP [biosample_summary="Homo sapiens T-cell male adult (26 years)"]
HISTOGRAM FOR DNase-seq_ENCSR217PZP [0.304, 93.7]
n
8,716,577
mean
8.1
sd
11.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87165770.27% 46170
chr1 874584 0.35% 4635
chr2 624204 0.26% 3310
chr3 474091 0.24% 2514
chr4 302389 0.16% 1601
chr5 392848 0.22% 2093
chr6 520152 0.30% 2746
chr7 410772 0.26% 2196
chr8 326714 0.23% 1765
chr9 346284 0.25% 1825
chr10 394033 0.29% 2082
chr11 437593 0.32% 2332
chr12 442933 0.33% 2323
chr13 187172 0.16% 986
chr14 304571 0.28% 1615
chr15 276311 0.27% 1484
chr16 354009 0.39% 1887
chr17 525826 0.63% 2764
chr18 139161 0.17% 755
chr19 552151 0.94% 2832
chr20 247982 0.38% 1346
chr21 108273 0.23% 573
chr22 214366 0.42% 1127
chrX 248342 0.16% 1318
chrY 11816 0.02% 61
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46170 5 660 188.79 180
global segment-length histogram

Files

Filename Size md5
ENCFF156CAM.bed.gz 512.54 KB 5e0d47eaf260c0faf463c0535333b9fb
ENCFF156CAM.tabix.bed.gz 464.36 KB cd3e06714b418c8721e23d36ab066018
ENCFF156CAM.tabix.bed.gz.tbi 233.18 KB d8d75bd61f4e9ca0b65f57fde0e6dba1
genomic_resource.yaml 1.79 KB 208d77b5dbc8ce5cb4bcd43cee37bb36
statistics/