Resource

Id DNase-seq/ENCSR215DXTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR215DXT [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR215DXT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2020-05-28T00:56:24.007485+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR215DXT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR215DXT float

DNase-seq_ENCSR215DXT

DNase-seq ENCSR215DXT [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
HISTOGRAM FOR DNase-seq_ENCSR215DXT [0.103, 23.9]
n
8,834,063
mean
2.79
sd
2.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88340630.27% 47163
chr1 835574 0.34% 4452
chr2 627836 0.26% 3418
chr3 432014 0.22% 2305
chr4 331164 0.17% 1781
chr5 391627 0.22% 2130
chr6 396527 0.23% 2096
chr7 422161 0.26% 2266
chr8 419396 0.29% 2242
chr9 408862 0.30% 2203
chr10 433916 0.32% 2349
chr11 549484 0.41% 2927
chr12 407957 0.31% 2168
chr13 173156 0.15% 900
chr14 289565 0.27% 1534
chr15 277023 0.27% 1497
chr16 334148 0.37% 1784
chr17 504249 0.61% 2679
chr18 170512 0.21% 901
chr19 508079 0.87% 2618
chr20 274247 0.43% 1490
chr21 137600 0.29% 714
chr22 310887 0.61% 1642
chrX 197316 0.13% 1061
chrY 763 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47163 1 840 187.31 180
global segment-length histogram

Files

Filename Size md5
ENCFF436TTP.bed.gz 516.99 KB 8a49731c97f815e7c1b33e45802830a4
ENCFF436TTP.tabix.bed.gz 472.83 KB c6d87f68483cac3c5b1423d1792681f2
ENCFF436TTP.tabix.bed.gz.tbi 210.16 KB 5e9a6ee139e54cd4ded62f9bcf220c0c
genomic_resource.yaml 1.46 KB 1fd4572a2a711876475793fc1c77e369
statistics/