DNase-seq_ENCSR214QEO
DNase-seq ENCSR214QEO [biosample_summary="Homo sapiens large intestine tissue female embryo (91 days)"]
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| Id: | DNase-seq/ENCSR214QEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR214QEO [biosample_summary="Homo sapiens large intestine tissue female embryo (91 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (91 days) output_type: peaks audit_warning: Alignment file {ENCFF268WPW|/files/ENCFF268WPW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34249961 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF268WPW|/files/ENCFF268WPW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR214QEO | float |
DNase-seq_ENCSR214QEO |
DNase-seq ENCSR214QEO [biosample_summary="Homo sapiens large intestine tissue female embryo (91 days)"]
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[0.235, 15.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF180VCG.bed.gz | 490.0 KB | a098e38c4de75e3d7cfeb7f86ef6664a |
| ENCFF180VCG.bed.gz.dvc | 100.0 B | a882fbffac2a6e69f07d9d3e79ee5ceb |
| ENCFF180VCG.tabix.bed.gz | 438.24 KB | 2dd9414e8e08d9d5fb5a79044cad237e |
| ENCFF180VCG.tabix.bed.gz.dvc | 106.0 B | c89769b3464b5544383e8d8b4e36475c |
| ENCFF180VCG.tabix.bed.gz.tbi | 259.01 KB | 10176fc51d2129c4e819b11fce77ce8f |
| ENCFF180VCG.tabix.bed.gz.tbi.dvc | 110.0 B | 82b1281d924004f8d7a3e57675e7f828 |
| genomic_resource.yaml | 2.67 KB | cc239bf93286fb3b93e3b1367214d79b |
| genomic_resource_original.yaml | 2.57 KB | 9a4f8f82d5b0c54bc4565a2c45f8ee14 |
| statistics/ |