DNase-seq_ENCSR214NLQ
DNase-seq ENCSR214NLQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"]
×
| Id: | DNase-seq/ENCSR214NLQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR214NLQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: peaks audit_internal_action: Released analysis {ENCAN800QKW|/analyses/ENCAN800QKW/} has in progress subobject document {ee389410-0adf-48e5-b53e-fd829dad63b0|/documents/ee389410-0adf-48e5-b53e-fd829dad63b0/} audit_internal_action: Released analysis {ENCAN800QKW|/analyses/ENCAN800QKW/} has in progress subobject document {fc2c0477-32cc-45e5-9fb0-260e5901c990|/documents/fc2c0477-32cc-45e5-9fb0-260e5901c990/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF803BUE|/files/ENCFF803BUE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR214NLQ | float |
DNase-seq_ENCSR214NLQ |
DNase-seq ENCSR214NLQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)"]
|
|
[0.0517, 29] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF038ZBF.bed.gz | 1.09 MB | bdd8150dd43dd9b24b4a9594cf4236c8 |
| ENCFF038ZBF.bed.gz.dvc | 101.0 B | 07f955dd4950a583505b1555f17bfa0a |
| ENCFF038ZBF.tabix.bed.gz | 1019.28 KB | bcab440ce4e138c1727f399d9ba2aa9a |
| ENCFF038ZBF.tabix.bed.gz.dvc | 107.0 B | 931fc2643152b5bbc80fe228ceeb9f59 |
| ENCFF038ZBF.tabix.bed.gz.tbi | 387.65 KB | 234a81ca1a81d8d071191219396fa85b |
| ENCFF038ZBF.tabix.bed.gz.tbi.dvc | 110.0 B | cf414d4939929222a2194d9d580bf1e1 |
| genomic_resource.yaml | 2.48 KB | 01f0f4360470bf9c218f5341f8cc9517 |
| genomic_resource_original.yaml | 2.38 KB | 26fc523cc4a506e067182fa735aec538 |
| statistics/ |