DNase-seq_ENCSR213WNV
DNase-seq ENCSR213WNV [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
×
| Id: | DNase-seq/ENCSR213WNV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR213WNV [biosample_summary="Homo sapiens T-cell male adult (38 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF967WOH|/files/ENCFF967WOH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR213WNV | float |
DNase-seq_ENCSR213WNV |
DNase-seq ENCSR213WNV [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
|
|
[0.151, 34.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF313QBH.bed.gz | 415.69 KB | 8e87e0e1b42ade1f12fff866a48ef8a5 |
| ENCFF313QBH.bed.gz.dvc | 100.0 B | 37b83e6e9c6146b51637b0ff88874970 |
| ENCFF313QBH.tabix.bed.gz | 379.52 KB | eaeeba8aabf72f6813f9d9c7945da03b |
| ENCFF313QBH.tabix.bed.gz.dvc | 106.0 B | b129118e5aefcdfdd257bf78d9236994 |
| ENCFF313QBH.tabix.bed.gz.tbi | 196.96 KB | 986f5ab347bfd5b48c2693a43bd5b5e7 |
| ENCFF313QBH.tabix.bed.gz.tbi.dvc | 110.0 B | 791409b2a3f82eb93ab9f29daa08bb5a |
| genomic_resource.yaml | 2.0 KB | d3da3a7b8db539d861aac5e871e1e7ac |
| genomic_resource_original.yaml | 1.91 KB | fd3d0b641f4e79c6d0da2e96123d33a5 |
| statistics/ |