Resource

Id DNase-seq/ENCSR212VENcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR212VEN [biosample_summary="Homo sapiens placenta tissue male embryo"]
Description
Labels
  • accession: ENCSR212VEN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo
  • date_created: 2019-08-02T16:57:25.501215+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR212VEN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR212VEN float

DNase-seq_ENCSR212VEN
DNase-seq ENCSR212VEN [biosample_summary="Homo sapiens placenta tissue male embryo"]
 HISTOGRAM FOR DNase-seq_ENCSR212VEN [0.0307, 54.5]
n
33,558,437
mean
2.1
sd
3.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 335584371.04% 177326
chr1 3186567 1.28% 16899
chr2 2522405 1.04% 13508
chr3 1850371 0.93% 9969
chr4 1240897 0.65% 6747
chr5 1590344 0.88% 8597
chr6 1614373 0.95% 8797
chr7 1841759 1.16% 9751
chr8 1469739 1.01% 7786
chr9 1578555 1.14% 8319
chr10 1652462 1.24% 8738
chr11 1999421 1.48% 10301
chr12 1356326 1.02% 7328
chr13 633679 0.55% 3446
chr14 1166361 1.09% 6060
chr15 1141367 1.12% 5994
chr16 1296086 1.43% 6696
chr17 1757918 2.11% 9009
chr18 583374 0.73% 3205
chr19 1570135 2.68% 7901
chr20 1122275 1.74% 5860
chr21 483322 1.03% 2460
chr22 1051820 2.07% 5228
chrX 798057 0.51% 4422
chrY 50824 0.09% 305
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 177326 1 1180 189.25 180
global segment-length histogram

Files

Filename Size md5
ENCFF350JBK.bed.gz 1.89 MB 92762aa5a002b563531ed974ec4b41da
ENCFF350JBK.tabix.bed.gz 1.74 MB 193b362b82673fb9c16c69baf72ac5a5
ENCFF350JBK.tabix.bed.gz.tbi 447.88 KB fe7a4970b29e3ce968e930db10e5346e
genomic_resource.yaml 1.16 KB 0b23dd69bb442a0623a448b4b495002d
statistics/