DNase-seq_ENCSR211SUT
DNase-seq ENCSR211SUT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)"]
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| Id: | DNase-seq/ENCSR211SUT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR211SUT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF305LFG|/files/ENCFF305LFG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR211SUT | float |
DNase-seq_ENCSR211SUT |
DNase-seq ENCSR211SUT [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)"]
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[0.0441, 22.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF857HDH.bed.gz | 971.63 KB | 00a65d5c80deadb873c30c300c829654 |
| ENCFF857HDH.bed.gz.dvc | 100.0 B | d29810915b99fe2fbd0dc8637f44131b |
| ENCFF857HDH.tabix.bed.gz | 887.92 KB | 6bb55c46474b43c805723b3473c4455e |
| ENCFF857HDH.tabix.bed.gz.dvc | 106.0 B | 927664b9ec0fb5a79c06ced53a2a3298 |
| ENCFF857HDH.tabix.bed.gz.tbi | 336.94 KB | 557708cc78ea0959e93b939e1a3488ce |
| ENCFF857HDH.tabix.bed.gz.tbi.dvc | 110.0 B | 331c86440a3c5261c06979518a99b879 |
| genomic_resource.yaml | 2.06 KB | bc10736a7f816ba1fd09191ba3533116 |
| genomic_resource_original.yaml | 1.95 KB | fb6f9bb8fbef85db6df7d300d4ac72d6 |
| statistics/ |