DNase-seq_ENCSR210ESN
DNase-seq ENCSR210ESN [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)"]
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| Id: | DNase-seq/ENCSR210ESN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR210ESN [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (74 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF292PMY|/files/ENCFF292PMY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR210ESN | float |
DNase-seq_ENCSR210ESN |
DNase-seq ENCSR210ESN [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)"]
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[0.0639, 21.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF879NMM.bed.gz | 925.49 KB | 59ed93a3a69176ccdf59d7541a94a675 |
| ENCFF879NMM.bed.gz.dvc | 100.0 B | 59902bb7bf04bf3e426309b5f36cadc0 |
| ENCFF879NMM.tabix.bed.gz | 848.43 KB | ef7a08698eeae26ad08b18a9fa8fc3ce |
| ENCFF879NMM.tabix.bed.gz.dvc | 106.0 B | b5a009c6425d614195b03bd20e117a52 |
| ENCFF879NMM.tabix.bed.gz.tbi | 261.22 KB | c26b69124b46e96bbd636cfb7a9b9e40 |
| ENCFF879NMM.tabix.bed.gz.tbi.dvc | 110.0 B | 134ed4f728fa2d56ec85559c1a803295 |
| genomic_resource.yaml | 2.23 KB | c26f2212382a1854d9e5f9e6ccd059df |
| genomic_resource_original.yaml | 2.08 KB | 962a296e002b38ccc3103a5fa4b2a862 |
| statistics/ |