Resource
| Id | DNase-seq/ENCSR209ECO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR209ECO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF189NCP|/files/ENCFF189NCP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR209ECO | float |
DNase-seq_ENCSR209ECO |
DNase-seq ENCSR209ECO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.0808, 9.92] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8775452 | 0.27% | 46112 |
| chr1 | 807292 | 0.32% | 4279 |
| chr2 | 730017 | 0.30% | 3805 |
| chr3 | 451734 | 0.23% | 2405 |
| chr4 | 339773 | 0.18% | 1754 |
| chr5 | 383591 | 0.21% | 2065 |
| chr6 | 354522 | 0.21% | 1955 |
| chr7 | 450271 | 0.28% | 2335 |
| chr8 | 391583 | 0.27% | 2046 |
| chr9 | 420537 | 0.30% | 2210 |
| chr10 | 526802 | 0.39% | 2731 |
| chr11 | 558195 | 0.41% | 2960 |
| chr12 | 348332 | 0.26% | 1883 |
| chr13 | 149420 | 0.13% | 783 |
| chr14 | 268591 | 0.25% | 1436 |
| chr15 | 279141 | 0.27% | 1491 |
| chr16 | 335033 | 0.37% | 1746 |
| chr17 | 478555 | 0.57% | 2473 |
| chr18 | 146687 | 0.18% | 792 |
| chr19 | 442451 | 0.75% | 2215 |
| chr20 | 280257 | 0.43% | 1489 |
| chr21 | 136444 | 0.29% | 688 |
| chr22 | 312528 | 0.61% | 1615 |
| chrX | 182998 | 0.12% | 950 |
| chrY | 698 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46112 | 1 | 1360 | 190.31 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF721JCD.bed.gz | 490.67 KB | 564de736cf135d1a4d0d3a6f758c067a |
| ENCFF721JCD.tabix.bed.gz | 446.77 KB | 912c356f827b438c851c3657144e5d97 |
| ENCFF721JCD.tabix.bed.gz.tbi | 190.5 KB | 7aded9199c5d7f738d20589a3c0d3b8d |
| genomic_resource.yaml | 2.15 KB | 7f76fef5ca1147ed805c3ca9195f21eb |
| statistics/ |