DNase-seq_ENCSR209ECO
DNase-seq ENCSR209ECO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR209ECO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR209ECO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF189NCP|/files/ENCFF189NCP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR209ECO | float |
DNase-seq_ENCSR209ECO |
DNase-seq ENCSR209ECO [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0808, 9.92] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF721JCD.bed.gz | 490.67 KB | 564de736cf135d1a4d0d3a6f758c067a |
| ENCFF721JCD.bed.gz.dvc | 100.0 B | 31e2df7223d2668993013fce6c2c12a1 |
| ENCFF721JCD.tabix.bed.gz | 446.77 KB | 912c356f827b438c851c3657144e5d97 |
| ENCFF721JCD.tabix.bed.gz.dvc | 106.0 B | ec6affdbccf147bf4c38940cdcec5c7f |
| ENCFF721JCD.tabix.bed.gz.tbi | 190.5 KB | 7aded9199c5d7f738d20589a3c0d3b8d |
| ENCFF721JCD.tabix.bed.gz.tbi.dvc | 110.0 B | 57f4902c7d9dc2063e423d7c3bd28f50 |
| genomic_resource.yaml | 2.15 KB | 7f76fef5ca1147ed805c3ca9195f21eb |
| genomic_resource_original.yaml | 2.02 KB | dbae56d0bf74b338f4fc73cf74181cc0 |
| statistics/ |