Resource

Id DNase-seq/ENCSR207TUXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR207TUX [biosample_summary="Homo sapiens amniotic stem cell male embryo (15 weeks)"]
Description
Labels
  • accession: ENCSR207TUX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002639/
  • biosample_summary: Homo sapiens amniotic stem cell male embryo (15 weeks)
  • date_created: 2015-09-30T20:25:45.388429+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR207TUX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (15 weeks)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR207TUX float

DNase-seq_ENCSR207TUX
DNase-seq ENCSR207TUX [biosample_summary="Homo sapiens amniotic stem cell male embryo (15 weeks)"]
 HISTOGRAM FOR DNase-seq_ENCSR207TUX [4, 62]
n
7,190
mean
13.1
sd
10.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 7190<0.01% 53
chr1 790 <0.01% 5
chr2 940 <0.01% 6
chr4 150 <0.01% 1
chr5 150 <0.01% 1
chr6 470 <0.01% 3
chr7 150 <0.01% 1
chr9 300 <0.01% 2
chr10 150 <0.01% 1
chr11 720 <0.01% 8
chr12 300 <0.01% 2
chr16 150 <0.01% 1
chr17 620 <0.01% 4
chr19 450 <0.01% 3
chr20 600 <0.01% 4
chr22 720 <0.01% 6
chrX 150 <0.01% 1
chrY 380 <0.01% 4
3349 contigs with no values (922993783 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53 30 190 135.66 150
global segment-length histogram

Files

Filename Size md5
ENCFF841HED.bed.gz 654.0 B d29508ffccd05d15b53d8edad3a44da3
ENCFF841HED.tabix.bed.gz 617.0 B 3525d6aeae8bd2de2d3ed0ef838ec420
ENCFF841HED.tabix.bed.gz.tbi 2.83 KB 9c75d405c617e0145e41dc0fe6ccc4ee
genomic_resource.yaml 1.22 KB 1ad9afab6b3d23cafc4c236467994877
statistics/