| Id: | DNase-seq/ENCSR207CQH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR207CQH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF228XID|/files/ENCFF228XID/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30538766 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR207CQH | float |
DNase-seq_ENCSR207CQH |
DNase-seq ENCSR207CQH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours"]
|
 |
[0.295, 51.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF652SPK.bed.gz | 565.96 KB | 3844c735c13cc7582df22ca8c49030b2 |
| ENCFF652SPK.bed.gz.dvc | 100.0 B | b9a86a642824d99245a6e2cfaa61ffd4 |
| ENCFF652SPK.tabix.bed.gz | 512.86 KB | d78c91b6e7df232da9f0ee4bedfea718 |
| ENCFF652SPK.tabix.bed.gz.dvc | 106.0 B | a7134561be83844e4c5a02b78a79b6cb |
| ENCFF652SPK.tabix.bed.gz.tbi | 249.32 KB | 21a568b7196033bce290441db04c8493 |
| ENCFF652SPK.tabix.bed.gz.tbi.dvc | 110.0 B | bdaab329b75a52b0ac011f3721fb0b6c |
| genomic_resource.yaml | 2.78 KB | 48ae597b0dc7891babf0b4244f767b42 |
| genomic_resource_original.yaml | 2.5 KB | 88a8a8b3c27ffaf74cc54d91844f155d |
| statistics/ |