Resource

Id DNase-seq/ENCSR206OJJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR206OJJ [biosample_summary="Homo sapiens kidney tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR206OJJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female adult (47 years)
  • date_created: 2019-04-10T20:22:28.477668+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR206OJJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR206OJJ float

DNase-seq_ENCSR206OJJ

DNase-seq ENCSR206OJJ [biosample_summary="Homo sapiens kidney tissue female adult (47 years)"]
HISTOGRAM FOR DNase-seq_ENCSR206OJJ [0.0262, 30.3]
n
48,637,889
mean
0.869
sd
1.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 486378891.51% 242163
chr1 4253755 1.71% 21025
chr2 3349288 1.38% 17073
chr3 2020103 1.02% 10443
chr4 1832200 0.96% 9131
chr5 1969585 1.08% 10061
chr6 1718346 1.01% 8982
chr7 2837968 1.78% 14137
chr8 1889882 1.30% 9286
chr9 2443241 1.77% 11885
chr10 2278502 1.70% 11386
chr11 3008728 2.23% 14551
chr12 2018944 1.51% 10178
chr13 832764 0.73% 4293
chr14 1579087 1.48% 7832
chr15 1442802 1.41% 7421
chr16 2514146 2.78% 12280
chr17 3380247 4.06% 16557
chr18 664794 0.83% 3437
chr19 2516424 4.29% 12251
chr20 1738778 2.70% 8459
chr21 979500 2.10% 4719
chr22 2287748 4.50% 11002
chrX 1076194 0.69% 5733
chrY 4863 0.01% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 242163 1 1000 200.85 180
global segment-length histogram

Files

Filename Size md5
ENCFF132KNJ.bed.gz 2.38 MB 8568e589cb7e0986ae54d3b418fa03d7
ENCFF132KNJ.tabix.bed.gz 2.24 MB 7880d8cf6ad0426cc5ebb3d06d141a84
ENCFF132KNJ.tabix.bed.gz.tbi 391.88 KB b38aa7955bbe641eb2850d82ee12ea07
genomic_resource.yaml 1.21 KB 5323b3093b3083600739da98eb11438d
statistics/