DNase-seq_ENCSR206KJN
DNase-seq ENCSR206KJN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
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| Id: | DNase-seq/ENCSR206KJN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR206KJN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: peaks audit_warning: Alignment file {ENCFF058GOA|/files/ENCFF058GOA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40143806 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR206KJN | float |
DNase-seq_ENCSR206KJN |
DNase-seq ENCSR206KJN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
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[0.299, 133] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF408IRJ.bed.gz | 499.35 KB | d2a6c916f7069ee147e59195ac328aef |
| ENCFF408IRJ.bed.gz.dvc | 100.0 B | eec21d74cdeac83e5371ec6c11152bdc |
| ENCFF408IRJ.tabix.bed.gz | 453.29 KB | fb126aa82e9d776ee53b1a3414e6c4e6 |
| ENCFF408IRJ.tabix.bed.gz.dvc | 106.0 B | b6699fbe9aafbff16c52b172f417fdca |
| ENCFF408IRJ.tabix.bed.gz.tbi | 217.66 KB | 9547a89a8ac03934aacb4741208ace95 |
| ENCFF408IRJ.tabix.bed.gz.tbi.dvc | 110.0 B | a06e374b520891fa227c051af3a94065 |
| genomic_resource.yaml | 1.88 KB | def1f29a8cb7c2119b09757b6b5b7fc0 |
| genomic_resource_original.yaml | 1.77 KB | 2ea0f98989a703eeb75e2bf7a9a5c666 |
| statistics/ |