| Id: | DNase-seq/ENCSR205ECC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR205ECC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF874RBL|/files/ENCFF874RBL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22946280 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR205ECC | float |
DNase-seq_ENCSR205ECC |
DNase-seq ENCSR205ECC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
|
 |
[0.393, 69.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF487FTY.bed.gz | 495.35 KB | 9482d573692b1f706134732ff0122fcb |
| ENCFF487FTY.bed.gz.dvc | 100.0 B | a7bc0952e0bbd4ce8ee2651204e051ba |
| ENCFF487FTY.tabix.bed.gz | 444.41 KB | e1b6101147eb91cf0e4e9b8352ce029c |
| ENCFF487FTY.tabix.bed.gz.dvc | 106.0 B | d38da432a5ecb4515ffc292fb96845ef |
| ENCFF487FTY.tabix.bed.gz.tbi | 236.17 KB | c606b291a5c88ab1adac6ec568f8df95 |
| ENCFF487FTY.tabix.bed.gz.tbi.dvc | 110.0 B | 58f5e45433616800c06f53b749e31a2e |
| genomic_resource.yaml | 2.47 KB | 9717886b28b4f38ab0b9facd98206aa8 |
| genomic_resource_original.yaml | 2.24 KB | 257b50d7bb735507978c1e4df9d7a785 |
| statistics/ |