Resource

Id DNase-seq/ENCSR205ECCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR205ECC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
Description
Labels
  • accession: ENCSR205ECC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • date_created: 2020-04-19T18:36:47.662597+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR205ECC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR205ECC float

DNase-seq_ENCSR205ECC
DNase-seq ENCSR205ECC [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR205ECC [0.393, 69.5]
n
8,254,660
mean
7.26
sd
6.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82546600.26% 45480
chr1 834065 0.34% 4593
chr2 597924 0.25% 3342
chr3 462417 0.23% 2545
chr4 290849 0.15% 1593
chr5 374054 0.21% 2102
chr6 476283 0.28% 2645
chr7 381472 0.24% 2095
chr8 312024 0.21% 1733
chr9 344827 0.25% 1897
chr10 362380 0.27% 2008
chr11 413844 0.31% 2299
chr12 428128 0.32% 2320
chr13 167303 0.15% 927
chr14 277403 0.26% 1547
chr15 276051 0.27% 1546
chr16 338126 0.37% 1835
chr17 489202 0.59% 2673
chr18 135924 0.17% 761
chr19 532456 0.91% 2782
chr20 237599 0.37% 1338
chr21 89274 0.19% 501
chr22 198758 0.39% 1100
chrX 234113 0.15% 1297
chrY 184 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45480 2 700 181.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF487FTY.bed.gz 495.35 KB 9482d573692b1f706134732ff0122fcb
ENCFF487FTY.tabix.bed.gz 444.41 KB e1b6101147eb91cf0e4e9b8352ce029c
ENCFF487FTY.tabix.bed.gz.tbi 236.17 KB c606b291a5c88ab1adac6ec568f8df95
genomic_resource.yaml 2.47 KB 9717886b28b4f38ab0b9facd98206aa8
statistics/