DNase-seq_ENCSR200BNM
DNase-seq ENCSR200BNM [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (71 years)"]
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| Id: | DNase-seq/ENCSR200BNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR200BNM [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (71 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (71 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF772FON|/files/ENCFF772FON/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR200BNM | float |
DNase-seq_ENCSR200BNM |
DNase-seq ENCSR200BNM [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (71 years)"]
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[0.0368, 14.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF211WGV.bed.gz | 1.18 MB | fcacd63980ada2d1af0150a9cd8ed543 |
| ENCFF211WGV.bed.gz.dvc | 101.0 B | d68609a7b74737d24eefb412d3d7401c |
| ENCFF211WGV.tabix.bed.gz | 1.09 MB | 1c839e7871a182c897beac3b9dc51247 |
| ENCFF211WGV.tabix.bed.gz.dvc | 107.0 B | 2583bfaa5c82ff292c046b4c916ca68b |
| ENCFF211WGV.tabix.bed.gz.tbi | 325.63 KB | 037d27753d4d57b788144fccdd7cb86f |
| ENCFF211WGV.tabix.bed.gz.tbi.dvc | 110.0 B | 89b3ab250fb2aa0c2c08394e33cadf6a |
| genomic_resource.yaml | 2.07 KB | 77dbf6c8a9bcd57bd0f34ea27b0786e6 |
| genomic_resource_original.yaml | 1.96 KB | 47d5b2d0cd4a0fba43e1d449c66e1fa8 |
| statistics/ |