DNase-seq_ENCSR197BFD
DNase-seq ENCSR197BFD [biosample_summary="Homo sapiens mesenteric fat pad tissue female adult (59 years)"]
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| Id: | DNase-seq/ENCSR197BFD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR197BFD [biosample_summary="Homo sapiens mesenteric fat pad tissue female adult (59 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF446CLG|/files/ENCFF446CLG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR197BFD | float |
DNase-seq_ENCSR197BFD |
DNase-seq ENCSR197BFD [biosample_summary="Homo sapiens mesenteric fat pad tissue female adult (59 years)"]
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[0.0429, 6.35] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF925JXF.bed.gz | 1.78 MB | 9a58b3c21ea62769cf58c88de93ff28b |
| ENCFF925JXF.bed.gz.dvc | 101.0 B | fe1ac1886a34c10233dbccc07b322996 |
| ENCFF925JXF.tabix.bed.gz | 1.71 MB | f2b9bec1e9d126437e6a2229994ed9fa |
| ENCFF925JXF.tabix.bed.gz.dvc | 107.0 B | 2708a6d922d94a8a6c62dd9a0958904c |
| ENCFF925JXF.tabix.bed.gz.tbi | 217.1 KB | 89c0d47170ca4a1cb94c38c5de500e35 |
| ENCFF925JXF.tabix.bed.gz.tbi.dvc | 110.0 B | d301e7a13105673e07843f683fae8fb2 |
| genomic_resource.yaml | 2.06 KB | 0301e715f8e3371519fa48320384d6d6 |
| genomic_resource_original.yaml | 1.95 KB | f593bc36c31c328d2d5a234d0f26a9fd |
| statistics/ |