DNase-seq_ENCSR195ONB
DNase-seq ENCSR195ONB [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR195ONB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR195ONB [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN785BGD|/analyses/ENCAN785BGD/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF697BUT|/files/ENCFF697BUT/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR195ONB | float |
DNase-seq_ENCSR195ONB |
DNase-seq ENCSR195ONB [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)"]
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[7, 6.59e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF491CZT.bed.gz | 644.58 KB | b52d340a64de6f1860e61388ff57e614 |
| ENCFF491CZT.bed.gz.dvc | 100.0 B | f1655f58c43dcc380b5228159056f700 |
| ENCFF491CZT.tabix.bed.gz | 550.44 KB | 58f1e23320755d94a868e22007dd203b |
| ENCFF491CZT.tabix.bed.gz.dvc | 106.0 B | 97f49629b283e0710f0bb6cc119a3cb9 |
| ENCFF491CZT.tabix.bed.gz.tbi | 309.5 KB | dc1fad944d4d4b6eb86f808c63aee60d |
| ENCFF491CZT.tabix.bed.gz.tbi.dvc | 110.0 B | 497761606b258c042676badd32eedcae |
| genomic_resource.yaml | 2.21 KB | a008f4b74d68a7beb272c1e713a3f4a9 |
| genomic_resource_original.yaml | 2.1 KB | 7e1d406f0e3a935f948e5b2ebc619cd2 |
| statistics/ |