Resource

Id DNase-seq/ENCSR189YJQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR189YJQ [biosample_summary="Homo sapiens heart tissue female embryo (110 days)"]
Description
Labels
  • accession: ENCSR189YJQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000948/
  • biosample_summary: Homo sapiens heart tissue female embryo (110 days)
  • date_created: 2015-09-16T21:42:25.949185+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR189YJQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (110 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR189YJQ float

DNase-seq_ENCSR189YJQ
DNase-seq ENCSR189YJQ [biosample_summary="Homo sapiens heart tissue female embryo (110 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR189YJQ [2, 4.6e+03]
n
17,095,568
mean
78.5
sd
99.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 170955680.53% 113698
chr1 1586396 0.64% 10554
chr2 1392426 0.57% 9255
chr3 1171338 0.59% 7780
chr4 947319 0.50% 6299
chr5 993338 0.55% 6604
chr6 1047115 0.61% 6973
chr7 894698 0.56% 5947
chr8 803401 0.55% 5348
chr9 689733 0.50% 4583
chr10 835614 0.62% 5565
chr11 859562 0.64% 5722
chr12 832923 0.62% 5539
chr13 495548 0.43% 3290
chr14 494240 0.46% 3283
chr15 557558 0.55% 3707
chr16 520724 0.58% 3468
chr17 673687 0.81% 4486
chr18 417046 0.52% 2771
chr19 508796 0.87% 3386
chr20 400629 0.62% 2667
chr21 202301 0.43% 1344
chr22 301280 0.59% 2002
chrX 468846 0.30% 3118
chrY 1050 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113698 13 446 150.36 150
global segment-length histogram

Files

Filename Size md5
ENCFF805BEX.bed.gz 1.08 MB f8ee50d2713ad5d58ee412988536a782
ENCFF805BEX.tabix.bed.gz 952.77 KB bdac0c24b73e94868ebae224425cb789
ENCFF805BEX.tabix.bed.gz.tbi 495.88 KB 35295a0f9d326356352f374b90191422
genomic_resource.yaml 1.39 KB 6d103508c4e6398f82f72e4c2f3db3ba
statistics/