Resource

Id DNase-seq/ENCSR187PYYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR187PYY [biosample_summary="Homo sapiens brain tissue female embryo (142 days)"]
Description
Labels
  • accession: ENCSR187PYY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue female embryo (142 days)
  • date_created: 2015-09-16T21:42:27.535401+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR187PYY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (142 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR187PYY float

DNase-seq_ENCSR187PYY
DNase-seq ENCSR187PYY [biosample_summary="Homo sapiens brain tissue female embryo (142 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR187PYY [0.206, 17.9]
n
11,285,144
mean
2.39
sd
2.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 112851440.35% 53094
chr1 978686 0.39% 4579
chr2 971808 0.40% 4587
chr3 744957 0.38% 3529
chr4 600769 0.32% 2815
chr5 668319 0.37% 3169
chr6 690925 0.40% 3191
chr7 613907 0.39% 2913
chr8 534184 0.37% 2515
chr9 448050 0.32% 2104
chr10 502654 0.38% 2425
chr11 555519 0.41% 2588
chr12 568532 0.43% 2622
chr13 324028 0.28% 1550
chr14 395195 0.37% 1768
chr15 349539 0.34% 1657
chr16 365151 0.40% 1706
chr17 425757 0.51% 2030
chr18 269447 0.34% 1276
chr19 392726 0.67% 1789
chr20 285565 0.44% 1373
chr21 113404 0.24% 546
chr22 177216 0.35% 859
chrX 308666 0.20% 1502
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53094 1 1054 212.55 200
global segment-length histogram

Files

Filename Size md5
ENCFF572DGX.bed.gz 553.94 KB b1c7a01cbcdca9fd5499e81d4a3c195f
ENCFF572DGX.tabix.bed.gz 500.88 KB 3011e73794885944a30582b842325b60
ENCFF572DGX.tabix.bed.gz.tbi 292.73 KB 5647ec09f01c7c7e00c26b87246dd8ec
genomic_resource.yaml 1.82 KB fbcdcee022b0736d39a943bcb442e4c8
statistics/