Resource
| Id | DNase-seq/ENCSR184TUE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR184TUE [biosample_summary="Homo sapiens naive B cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF967UEJ|/files/ENCFF967UEJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR184TUE | float |
DNase-seq_ENCSR184TUE |
DNase-seq ENCSR184TUE [biosample_summary="Homo sapiens naive B cell"]
|
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[0.09, 17.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13522879 | 0.42% | 60256 |
| chr1 | 1299703 | 0.52% | 5709 |
| chr2 | 992443 | 0.41% | 4418 |
| chr3 | 783576 | 0.40% | 3523 |
| chr4 | 518776 | 0.27% | 2354 |
| chr5 | 655269 | 0.36% | 2878 |
| chr6 | 866981 | 0.51% | 3758 |
| chr7 | 674138 | 0.42% | 3031 |
| chr8 | 548941 | 0.38% | 2459 |
| chr9 | 548696 | 0.40% | 2511 |
| chr10 | 605290 | 0.45% | 2704 |
| chr11 | 673531 | 0.50% | 2982 |
| chr12 | 715337 | 0.54% | 3152 |
| chr13 | 300105 | 0.26% | 1326 |
| chr14 | 461749 | 0.43% | 2037 |
| chr15 | 429531 | 0.42% | 1978 |
| chr16 | 503633 | 0.56% | 2314 |
| chr17 | 766777 | 0.92% | 3337 |
| chr18 | 248221 | 0.31% | 1099 |
| chr19 | 735905 | 1.26% | 3276 |
| chr20 | 349309 | 0.54% | 1603 |
| chr21 | 146547 | 0.31% | 668 |
| chr22 | 306820 | 0.60% | 1382 |
| chrX | 391481 | 0.25% | 1756 |
| chrY | 120 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60256 | 4 | 1060 | 224.42 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF214BTG.bed.gz | 644.12 KB | 9bfa2b239e0409d131caf24b04e92034 |
| ENCFF214BTG.tabix.bed.gz | 601.18 KB | 8f3e7c9e52558942e5c27813ffc6fc1c |
| ENCFF214BTG.tabix.bed.gz.tbi | 266.93 KB | 0011399b4375e6c00368deec49241454 |
| genomic_resource.yaml | 1.93 KB | 1f339950df4ef5857fdb6742043b33e9 |
| statistics/ |
