DNase-seq_ENCSR184TUE
DNase-seq ENCSR184TUE [biosample_summary="Homo sapiens naive B cell"]
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| Id: | DNase-seq/ENCSR184TUE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR184TUE [biosample_summary="Homo sapiens naive B cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF967UEJ|/files/ENCFF967UEJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR184TUE | float |
DNase-seq_ENCSR184TUE |
DNase-seq ENCSR184TUE [biosample_summary="Homo sapiens naive B cell"]
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[0.09, 17.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF214BTG.bed.gz | 644.12 KB | 9bfa2b239e0409d131caf24b04e92034 |
| ENCFF214BTG.bed.gz.dvc | 100.0 B | 6cfc5805a2c0f4a0b2b6c2f90b5b4c47 |
| ENCFF214BTG.tabix.bed.gz | 601.18 KB | 8f3e7c9e52558942e5c27813ffc6fc1c |
| ENCFF214BTG.tabix.bed.gz.dvc | 106.0 B | 7494d17b04c5bbaa6fa6e3182012a183 |
| ENCFF214BTG.tabix.bed.gz.tbi | 266.93 KB | 0011399b4375e6c00368deec49241454 |
| ENCFF214BTG.tabix.bed.gz.tbi.dvc | 110.0 B | 58ab18ea09428134f4b468d78e8b67de |
| genomic_resource.yaml | 1.93 KB | 1f339950df4ef5857fdb6742043b33e9 |
| genomic_resource_original.yaml | 1.85 KB | a8301c8c6ccd43be3caadeca84634e1a |
| statistics/ |