Resource

Id DNase-seq/ENCSR184LMYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR184LMY [biosample_summary="Homo sapiens fibroblast of skin of back male embryo (97 days)"]
Description
Labels
  • accession: ENCSR184LMY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0011022/
  • biosample_summary: Homo sapiens fibroblast of skin of back male embryo (97 days)
  • date_created: 2015-09-16T21:42:13.576727+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR184LMY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR184LMY float

DNase-seq_ENCSR184LMY

DNase-seq ENCSR184LMY [biosample_summary="Homo sapiens fibroblast of skin of back male embryo (97 days)"]
HISTOGRAM FOR DNase-seq_ENCSR184LMY [0.0339, 47.9]
n
47,518,236
mean
1.95
sd
3.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 475182361.48% 252926
chr1 4214112 1.69% 22489
chr2 4001048 1.65% 21380
chr3 3375080 1.70% 18022
chr4 2693272 1.42% 14476
chr5 2960727 1.63% 15687
chr6 3037516 1.78% 16000
chr7 2469808 1.55% 13158
chr8 2218720 1.53% 11818
chr9 2018573 1.46% 10685
chr10 2267121 1.69% 12125
chr11 2327738 1.72% 12320
chr12 2308902 1.73% 12256
chr13 1379026 1.21% 7370
chr14 1439994 1.35% 7702
chr15 1558724 1.53% 8226
chr16 1326124 1.47% 7070
chr17 1691590 2.03% 8956
chr18 1158052 1.44% 6207
chr19 1172486 2.00% 6105
chr20 1143759 1.77% 6071
chr21 584611 1.25% 3103
chr22 714626 1.41% 3806
chrX 1395486 0.89% 7566
chrY 61141 0.11% 328
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 252926 1 880 187.87 180
global segment-length histogram

Files

Filename Size md5
ENCFF575ZSG.bed.gz 2.72 MB 6c7bfa6595f43bbf021e17cadac7f7ba
ENCFF575ZSG.tabix.bed.gz 2.49 MB 9e7284f9997e9305fbb07b6d6f2651b1
ENCFF575ZSG.tabix.bed.gz.tbi 717.39 KB c409cb83187982cf88f4cd7265e7db2a
genomic_resource.yaml 1.24 KB d932bb54c6aedc7aa99007afaff16240
statistics/