DNase-seq_ENCSR184DFF
DNase-seq ENCSR184DFF [biosample_summary="Homo sapiens left kidney tissue male embryo (96 days)"]
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| Id: | DNase-seq/ENCSR184DFF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR184DFF [biosample_summary="Homo sapiens left kidney tissue male embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (96 days) output_type: peaks audit_warning: Alignment file {ENCFF231WEG|/files/ENCFF231WEG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34907340 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF231WEG|/files/ENCFF231WEG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR184DFF | float |
DNase-seq_ENCSR184DFF |
DNase-seq ENCSR184DFF [biosample_summary="Homo sapiens left kidney tissue male embryo (96 days)"]
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[0.23, 10.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF615JYB.bed.gz | 406.55 KB | 04a75fb9a3ce9c5de4bd81dc0b8dd67c |
| ENCFF615JYB.bed.gz.dvc | 100.0 B | 159132c40d40cf188fbbd022c6c96936 |
| ENCFF615JYB.tabix.bed.gz | 375.56 KB | 5390fc5b4ed8f6fb6c4e117a3601f71b |
| ENCFF615JYB.tabix.bed.gz.dvc | 106.0 B | 436333748526f7e71acbfb68d126931e |
| ENCFF615JYB.tabix.bed.gz.tbi | 204.88 KB | 407481be7252f831aa8aeeb0225bab59 |
| ENCFF615JYB.tabix.bed.gz.tbi.dvc | 110.0 B | 16d694d77874e38c93a219a643957f29 |
| genomic_resource.yaml | 2.65 KB | e63b1d754ee4b70b4f12d78053b2a76d |
| genomic_resource_original.yaml | 2.55 KB | 9b9ed768c8074e8aa6e0ce6147668bf3 |
| statistics/ |